- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.1700:Glycoside hydrolase family 3 C-terminal domain
PDB Entries
| PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
|---|---|---|---|---|---|---|---|---|
| Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
| 1ex1 | [A] | [A] | [A] | 2.2 | FCA:ALPHA-D-FUCOPYRANOSE GLC:ALPHA-D-GLUCOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 1ieq | [A] | [A] | [A] | 2.7 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 1iev | [A] | [A] | [A] | 2.8 | BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE INS:1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 1iew | [A] | [A] | [A] | 2.55 | BMA:BETA-D-MANNOPYRANOSE FUL:BETA-L-FUCOPYRANOSE G2F:2-DEOXY-2-FLUORO-ALPHA-D-GLUCOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 1iex | [A] | [A] | [A] | 2.2 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SGC:4-THIO-BETA-D-GLUCOPYRANOSE | |||
| 1j8v | [A] | [A] | [A] | 2.4 | BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE LAM:4___sq___-NITROPHENYL-S-(BETA-D-GLUCOPYRANOSYL)-(1-3)-(3-THIO-BETA-D-GLUCOPYRANOSYL)-(1-3)-BETA-D-GLUCOPYRANOSIDE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 1lq2 | [A] | [A] | [A] | 2.7 | BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE GOL:GLYCEROL IDD:(5R,6R,7S,8S)-5-(HYDROXYMETHYL)-2-PHENYL-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 1x38 | [A] | [A] | [A] | 1.7 | BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE GOL:GLYCEROL IDD:(5R,6R,7S,8S)-5-(HYDROXYMETHYL)-2-PHENYL-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION XYP:BETA-D-XYLOPYRANOSE | |||
| 1x39 | [A] | [A] | [A] | 1.8 | BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE GOL:GLYCEROL IDE:(5R,6R,7S,8S)-3-(ANILINOMETHYL)-5,6,7,8-TETRAHYDRO-5-(HYDROXYMETHYL)-IMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION XYP:BETA-D-XYLOPYRANOSE | |||
| 2x40 | [A2] | [A2] | [A2] | 2.31 | BR:BROMIDE ION GOL:GLYCEROL | |||
| 2x41 | [A] | [A] | [A] | 2.05 | BGC:BETA-D-GLUCOPYRANOSE BR:BROMIDE ION | |||
| 2x42 |  | [A] | [A] | [A] | 2.1 | BR:BROMIDE ION GLC:ALPHA-D-GLUCOPYRANOSE | ||
| 3abz | [A4] | [A4] | [A4] | 2.15 | GOL:GLYCEROL MSE:SELENOMETHIONINE | |||
| 3ac0 | [A4] | [A4] | [A4] | 2.54 | BGC:BETA-D-GLUCOPYRANOSE | |||
| 3bmx | [A] | [A] | [A] | 1.4 | ACT:ACETATE ION NA:SODIUM ION P4G:1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE | |||
| 3lk6 | [A] | [A] | [A] | 2.88 | NA:SODIUM ION PEG:DI(HYDROXYETHYL)ETHER | |||
| 3nvd | [A] | [A] | [A] | 1.84 | ACT:ACETATE ION NA:SODIUM ION OAN:O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE PG4:TETRAETHYLENE GLYCOL | |||
| 3rrx | | [A] | [A] | [A] | 1.9 | CA:CALCIUM ION EDO:1,2-ETHANEDIOL NA:SODIUM ION | ||
| 3u48 | [A2] | [A2] | [A2] | 2.2 | BGC:BETA-D-GLUCOPYRANOSE CA:CALCIUM ION | |||
| 3u4a | | [A2] | [A2] | [A2] | 2.2 | BGC:BETA-D-GLUCOPYRANOSE CA:CALCIUM ION | ||
| 3usz | [A] | [A] | [A] | 2.1 | CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION NA:SODIUM ION | |||
| 3ut0 | [A] | [A] | [A] | 2.3 | CA:CALCIUM ION EDO:1,2-ETHANEDIOL NA:SODIUM ION SO4:SULFATE ION | |||
| 3wlh | [A] | [A] | [A] | 1.65 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE FUL:BETA-L-FUCOPYRANOSE GOL:GLYCEROL MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION XYP:BETA-D-XYLOPYRANOSE | |||
| 3wli | [A] | [A] | [A] | 1.45 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION | |||
| 3wlj | [A] | [A] | [A] | 1.67 | 3DO:3-DEOXY-BETA-D-GLUCOPYRANOSE BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE FUL:BETA-L-FUCOPYRANOSE GOL:GLYCEROL MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION XYP:BETA-D-XYLOPYRANOSE | |||
| 3wlk | [A] | [A] | [A] | 1.8 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE FUL:BETA-L-FUCOPYRANOSE GOL:GLYCEROL MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION XYP:BETA-D-XYLOPYRANOSE | |||
| 3wll | [A] | [A] | [A] | 1.8 | BMA:BETA-D-MANNOPYRANOSE EDO:1,2-ETHANEDIOL FUC:ALPHA-L-FUCOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PEG:DI(HYDROXYETHYL)ETHER PG4:TETRAETHYLENE GLYCOL PGE:TRIETHYLENE GLYCOL XYP:BETA-D-XYLOPYRANOSE | |||
| 3wlm | [A] | [A] | [A] | 1.9 | BMA:BETA-D-MANNOPYRANOSE BOG:OCTYL BETA-D-GLUCOPYRANOSIDE FUC:ALPHA-L-FUCOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 3wln | [A] | [A] | [A] | 2 | BMA:BETA-D-MANNOPYRANOSE FUC:ALPHA-L-FUCOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SOG:OCTYL 1-THIO-BETA-D-GLUCOPYRANOSIDE | |||
| 3wlo | [A] | [A] | [A] | 1.55 | BGC:BETA-D-GLUCOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION | |||
| 3wlp | [A] | [A] | [A] | 1.57 | GOL:GLYCEROL GS1:1-THIO-BETA-D-GLUCOPYRANOSE MGL:METHYL BETA-D-GLUCOPYRANOSIDE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION | |||
| 3wlq | | [A] | [A] | [A] | 1.65 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | ||
| 3wlr | | [A] | [A] | [A] | 2.21 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | ||
| 3zyz | [A] | [A] | [A] | 2.1 | BGC:BETA-D-GLUCOPYRANOSE GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PEG:DI(HYDROXYETHYL)ETHER | |||
| 3zz1 | [A] | [A] | [A] | 2.1 | GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 4gyj | | [A] | [A] | [A] | 1.65 | MUB:N-ACETYL-ALPHA-MURAMIC ACID NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | ||
| 4gyk | | [A] | [A] | [A] | 1.8 | MUB:N-ACETYL-ALPHA-MURAMIC ACID NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | ||
| 4i3g | [A] | [A] | [A] | 1.4 | BGC:BETA-D-GLUCOPYRANOSE EDO:1,2-ETHANEDIOL MPO:3[N-MORPHOLINO]PROPANE SULFONIC ACID SO4:SULFATE ION | |||
| 4i8d | [A] | [A] | [A] | 2.48 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 4iib | [A2] | [A2] | [A2] | 1.8 | ACY:ACETIC ACID BMA:BETA-D-MANNOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 4iic | [A2] | [A2] | [A2] | 1.9 | BMA:BETA-D-MANNOPYRANOSE IFM:5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE MAN:ALPHA-D-MANNOPYRANOSE MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 4iid | [A2] | [A2] | [A2] | 2.3 | BMA:BETA-D-MANNOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NOJ:1-DEOXYNOJIRIMYCIN | |||
| 4iie | [A2] | [A2] | [A2] | 2 | BMA:BETA-D-MANNOPYRANOSE CGB:CALYSTEGINE B2 MAN:ALPHA-D-MANNOPYRANOSE MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 4iif | [A2] | [A2] | [A2] | 2.45 | BMA:BETA-D-MANNOPYRANOSE CTS:CASTANOSPERMINE MAN:ALPHA-D-MANNOPYRANOSE MPD:(4S)-2-METHYL-2,4-PENTANEDIOL MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 4iig | [A2] | [A2] | [A2] | 2.3 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 4iih | [A2] | [A2] | [A2] | 2 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE MRD:(4R)-2-METHYLPENTANE-2,4-DIOL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SGC:4-THIO-BETA-D-GLUCOPYRANOSE | |||
| 4zo6 | | [A2] | [A2] | [A2] | 2 | BGC:BETA-D-GLUCOPYRANOSE GOL:GLYCEROL MG:MAGNESIUM ION | ||
| 4zo7 | | [A2] | [A2] | [A2] | 2 | BGC:BETA-D-GLUCOPYRANOSE GLC:ALPHA-D-GLUCOPYRANOSE GOL:GLYCEROL MG:MAGNESIUM ION | ||
| 4zo8 | | [A2] | [A2] | [A2] | 2 | BGC:BETA-D-GLUCOPYRANOSE MG:MAGNESIUM ION | ||
| 4zo9 | | [A2] | [A2] | [A2] | 1.99 | BGC:BETA-D-GLUCOPYRANOSE GLC:ALPHA-D-GLUCOPYRANOSE GOL:GLYCEROL MG:MAGNESIUM ION | ||
| 4zoa | | [A2] | [A2] | [A2] | 2.17 | IFM:5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER | ||
| 4zob | | [A2] | [A2] | [A2] | 2.4 | GOL:GLYCEROL LGC:D-GLUCONO-1,5-LACTONE MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION | ||
| 4zoc | | [A2] | [A2] | [A2] | 1.79 | BGC:BETA-D-GLUCOPYRANOSE GOL:GLYCEROL MG:MAGNESIUM ION | ||
| 4zod | | [A2] | [A2] | [A2] | 2.1 | BGC:BETA-D-GLUCOPYRANOSE GOL:GLYCEROL MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION | ||
| 4zoe | | [A2] | [A2] | [A2] | 1.8 | GOL:GLYCEROL MG:MAGNESIUM ION | ||
| 5fji | [A2] | [A2] | [A2] | 1.95 | BMA:BETA-D-MANNOPYRANOSE EDO:1,2-ETHANEDIOL IMD:IMIDAZOLE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 5fjj | [A2] | [A2] | [A2] | 1.95 | BMA:BETA-D-MANNOPYRANOSE CL:CHLORIDE ION MAN:ALPHA-D-MANNOPYRANOSE MG:MAGNESIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PEG:DI(HYDROXYETHYL)ETHER PO4:PHOSPHATE ION | |||
| 5ju6 | [A4] | [A4] | [A4] | 2.2 | BGC:BETA-D-GLUCOPYRANOSE BMA:BETA-D-MANNOPYRANOSE GLC:ALPHA-D-GLUCOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 5nbs | [A] | [A] | [A] | 2.25 | BMA:BETA-D-MANNOPYRANOSE MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
| 5tf0 | [A2] | [A2] | [A2] | 2.2 | EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION MSE:SELENOMETHIONINE | |||
| 5xxl | [A2] | [A2] | [A2] | 1.6 | MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER PG4:TETRAETHYLENE GLYCOL | |||
| 5xxm | [A2] | [A2] | [A2] | 1.7 | LGC:D-GLUCONO-1,5-LACTONE MG:MAGNESIUM ION PG4:TETRAETHYLENE GLYCOL | |||
| 5xxn | | [A2] | [A2] | [A2] | 2.05 | BGC:BETA-D-GLUCOPYRANOSE GLC:ALPHA-D-GLUCOPYRANOSE MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER PG4:TETRAETHYLENE GLYCOL | ||
| 5xxo | [A2] | [A2] | [A2] | 2.02 | BGC:BETA-D-GLUCOPYRANOSE MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER PG4:TETRAETHYLENE GLYCOL | |||
| 6md6 | | [A] | [A] | [A] | 1.68 | 1PE:PENTAETHYLENE GLYCOL BGC:BETA-D-GLUCOPYRANOSE GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION U2A:METHYL 2-THIO-BETA-D-GLUCOPYRANOSIDE | ||
| 6mi1 | | [A] | [A] | [A] | 2.3 | BGC:BETA-D-GLUCOPYRANOSE GOL:GLYCEROL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION U1Y:METHYL 6-THIO-BETA-D-GLUCOPYRANOSIDE | ||
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
